ENmix

DOI: 10.18129/B9.bioc.ENmix  

Quality control and analysis tools for Illumina DNA methylation BeadChip

Bioconductor version: Release (3.17)

Tools for quanlity control, analysis and visulization of Illumina DNA methylation array data.

Author: Zongli Xu [cre, aut], Liang Niu [aut], Jack Taylor [ctb]

Maintainer: Zongli Xu <xuz at niehs.nih.gov>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ENmix")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ENmix")

 

HTML	R Script	ENmix User's Guide
PDF		Reference Manual
Text		NEWS

Details

biocViews	BatchEffect, DNAMethylation, DataImport, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylationArray, Microarray, MultiChannel, Normalization, OneChannel, Preprocessing, PrincipalComponent, QualityControl, Regression, Software, TwoChannel
Version	1.36.08
In Bioconductor since	BioC 3.1 (R-3.2) (8.5 years)
License	Artistic-2.0
Depends	parallel, doParallel, foreach, SummarizedExperiment, stats, R (>= 3.5.0)
Imports	grDevices, graphics, matrixStats, methods, utils, irlba, geneplotter, impute, minfi, RPMM, illuminaio, dynamicTreeCut, IRanges, gtools, Biobase, ExperimentHub, AnnotationHub, genefilter, gplots, quadprog, S4Vectors
LinkingTo
Suggests	minfiData, RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/Bioconductor/ENmix
BugReports	https://github.com/Bioconductor/ENmix/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ENmix_1.36.08.tar.gz
Windows Binary	ENmix_1.36.08.zip
macOS Binary (x86_64)	ENmix_1.36.08.tgz
macOS Binary (arm64)	ENmix_1.36.08.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ENmix
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ENmix
Bioc Package Browser	https://code.bioconductor.org/browse/ENmix/
Package Short Url	https://bioconductor.org/packages/ENmix/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.17	Source Archive