DOI: 10.18129/B9.bioc.BgeeDB    

This is the development version of BgeeDB; for the stable release version, see BgeeDB.

Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities Enrichment Analysis tool for UBERON ontology

Bioconductor version: Development (3.17)

A package for the annotation and gene expression data download from Bgee database, and TopAnat analysis: GO-like enrichment of anatomical terms, mapped to genes by expression patterns.

Author: Andrea Komljenovic [aut, cre], Julien Roux [aut, cre]

Maintainer: Julien Wollbrett <julien.wollbrett at>, Julien Roux <julien.roux at>, Andrea Komljenovic <andreakomljenovic at>, Frederic Bastian <bgee at>

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HTML R Script BgeeDB, an R package for retrieval of curated expression datasets and for gene list enrichment tests
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biocViews DataImport, GO, GeneExpression, GeneSetEnrichment, Microarray, Sequencing, Software
Version 2.25.0
In Bioconductor since BioC 3.3 (R-3.3) (6.5 years)
License GPL-3 + file LICENSE
Depends R (>= 3.6.0), topGO, tidyr
Imports R.utils, data.table, curl, RCurl, digest, methods, stats, utils, dplyr, RSQLite, graph, Biobase
Suggests knitr, BiocStyle, testthat, rmarkdown, markdown
Depends On Me
Imports Me psygenet2r, RITAN
Suggests Me RITAN
Links To Me
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