DOI: 10.18129/B9.bioc.BEclear    

This is the development version of BEclear; for the stable release version, see BEclear.

Correction of batch effects in DNA methylation data

Bioconductor version: Development (3.17)

Provides functions to detect and correct for batch effects in DNA methylation data. The core function is based on latent factor models and can also be used to predict missing values in any other matrix containing real numbers.

Author: David Rasp [aut, cre] , Markus Merl [aut], Ruslan Akulenko [aut]

Maintainer: David Rasp <david.j.rasp at>

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biocViews BatchEffect, DNAMethylation, Preprocessing, Software, StatisticalMethod
Version 2.15.0
In Bioconductor since BioC 3.1 (R-3.2) (7.5 years)
License GPL-3
Depends BiocParallel(>= 1.14.2)
Imports futile.logger, Rdpack, Matrix, data.table (>= 1.11.8), Rcpp, abind, stats, graphics, utils, methods, dixonTest, ids
LinkingTo Rcpp
Suggests testthat, BiocStyle, knitr, rmarkdown, pander, seewave
SystemRequirements C++11
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