AffyRNADegradation

DOI: 10.18129/B9.bioc.AffyRNADegradation    

This is the development version of AffyRNADegradation; for the stable release version, see AffyRNADegradation.

Analyze and correct probe positional bias in microarray data due to RNA degradation

Bioconductor version: Development (3.17)

The package helps with the assessment and correction of RNA degradation effects in Affymetrix 3' expression arrays. The parameter d gives a robust and accurate measure of RNA integrity. The correction removes the probe positional bias, and thus improves comparability of samples that are affected by RNA degradation.

Author: Mario Fasold

Maintainer: Mario Fasold <fasold at izbi.uni-leipzig.de>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("AffyRNADegradation")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AffyRNADegradation")

 

PDF	R Script	AffyRNADegradation Example
PDF		Reference Manual

Details

biocViews	GeneExpression, Microarray, OneChannel, Preprocessing, QualityControl, Software
Version	1.45.0
In Bioconductor since	BioC 2.10 (R-2.15) (10.5 years)
License	GPL-2
Depends	R (>= 2.9.0), methods, affy
Imports
LinkingTo
Suggests	AmpAffyExample
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	AffyRNADegradation_1.45.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/AffyRNADegradation
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/AffyRNADegradation
Package Short Url	https://bioconductor.org/packages/AffyRNADegradation/
Package Downloads Report	Download Stats