ABarray

DOI: 10.18129/B9.bioc.ABarray  

Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1700) gene expression data.

Bioconductor version: Release (3.17)

Automated pipline to perform gene expression analysis for Applied Biosystems Genome Survey Microarray (AB1700) data format. Functions include data preprocessing, filtering, control probe analysis, statistical analysis in one single function. A GUI interface is also provided. The raw data, processed data, graphics output and statistical results are organized into folders according to the analysis settings used.

Author: Yongming Andrew Sun

Maintainer: Yongming Andrew Sun <sunya at appliedbiosystems.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ABarray")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ABarray")

 

PDF		ABarray gene expression
PDF		ABarray gene expression GUI interface
PDF		Reference Manual

Details

biocViews	Microarray, OneChannel, Preprocessing, Software
Version	1.68.0
In Bioconductor since	BioC 1.9 (R-2.4) (17 years)
License	GPL
Depends
Imports	Biobase, graphics, grDevices, methods, multtest, stats, tcltk, utils
LinkingTo
Suggests	limma, LPE
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ABarray_1.68.0.tar.gz
Windows Binary	ABarray_1.68.0.zip
macOS Binary (x86_64)	ABarray_1.68.0.tgz
macOS Binary (arm64)	ABarray_1.68.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ABarray
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ABarray
Bioc Package Browser	https://code.bioconductor.org/browse/ABarray/
Package Short Url	https://bioconductor.org/packages/ABarray/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.17	Source Archive