BSgenome.Vvinifera.URGI.IGGP8X

DOI: 10.18129/B9.bioc.BSgenome.Vvinifera.URGI.IGGP8X  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see BSgenome.Vvinifera.URGI.IGGP8X.

Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 (IGGP version 8X)

Bioconductor version: 3.16

Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 (derived from Pinot Noir and close to homozygosity after 6-9 rounds of selfing) as assembled by the IGGP (version 8X) and available at the URGI (INRA). More details in Jaillon et al (Nature, 2007).

Author: Timothee Flutre [cre,aut]

Maintainer: Timothee Flutre <timothee.flutre at supagro.inra.fr>

Citation (from within R, enter citation("BSgenome.Vvinifera.URGI.IGGP8X")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BSgenome.Vvinifera.URGI.IGGP8X")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews AnnotationData, BSgenome, Genetics, Vitis_vinifera
Version 0.1
License CC0
Depends BSgenome(>= 1.38.0)
Imports BSgenome
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BSgenome.Vvinifera.URGI.IGGP8X_0.1.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url https://bioconductor.org/packages/BSgenome.Vvinifera.URGI.IGGP8X/
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