DOI: 10.18129/B9.bioc.wpm  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see wpm.

Well Plate Maker

Bioconductor version: 3.16

The Well-Plate Maker (WPM) is a shiny application deployed as an R package. Functions for a command-line/script use are also available. The WPM allows users to generate well plate maps to carry out their experiments while improving the handling of batch effects. In particular, it helps controlling the "plate effect" thanks to its ability to randomize samples over multiple well plates. The algorithm for placing the samples is inspired by the backtracking algorithm: the samples are placed at random while respecting specific spatial constraints.

Author: Helene Borges [aut, cre], Thomas Burger [aut]

Maintainer: Helene Borges <borges.helene.sophie at gmail.com>

Citation (from within R, enter citation("wpm")):


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if (!require("BiocManager", quietly = TRUE))


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HTML R Script How to use Well Plate Maker
PDF   Reference Manual
Text   NEWS


biocViews BatchEffect, ExperimentalDesign, GUI, MassSpectrometry, Proteomics, Software
Version 1.8.0
In Bioconductor since BioC 3.12 (R-4.0) (2.5 years)
License Artistic-2.0
Depends R (>= 4.1.0)
Imports utils, methods, cli, Biobase, SummarizedExperiment, config, golem, shiny, DT, ggplot2, dplyr, rlang, stringr, shinydashboard, shinyWidgets, shinycustomloader, RColorBrewer, logging
Suggests MSnbase, testthat, BiocStyle, knitr, rmarkdown
URL https://github.com/HelBor/wpm https://bioconductor.org/packages/release/bioc/html/wpm.html
BugReports https://github.com/HelBor/wpm/issues
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Source Package wpm_1.8.0.tar.gz
Windows Binary wpm_1.8.0.zip
macOS Binary (x86_64) wpm_1.8.0.tgz
macOS Binary (arm64) wpm_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/wpm
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/wpm
Bioc Package Browser https://code.bioconductor.org/browse/wpm/
Package Short Url https://bioconductor.org/packages/wpm/
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