DOI: 10.18129/B9.bioc.wiggleplotr  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see wiggleplotr.

Make read coverage plots from BigWig files

Bioconductor version: 3.16

Tools to visualise read coverage from sequencing experiments together with genomic annotations (genes, transcripts, peaks). Introns of long transcripts can be rescaled to a fixed length for better visualisation of exonic read coverage.

Author: Kaur Alasoo [aut, cre]

Maintainer: Kaur Alasoo <kaur.alasoo at gmail.com>

Citation (from within R, enter citation("wiggleplotr")):


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biocViews AlternativeSplicing, ChIPSeq, Coverage, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software, Transcription, Visualization
Version 1.22.0
In Bioconductor since BioC 3.5 (R-3.4) (6 years)
License Apache License 2.0
Depends R (>= 3.6)
Imports dplyr, ggplot2 (>= 2.2.0), GenomicRanges, rtracklayer, cowplot, assertthat, purrr, S4Vectors, IRanges, GenomeInfoDb
Suggests knitr, rmarkdown, biomaRt, GenomicFeatures, testthat, ensembldb, EnsDb.Hsapiens.v86, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg38.knownGene, AnnotationDbi, AnnotationFilter
Depends On Me
Imports Me factR
Suggests Me MARVEL
Links To Me
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Source Package wiggleplotr_1.22.0.tar.gz
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Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/wiggleplotr
Bioc Package Browser https://code.bioconductor.org/browse/wiggleplotr/
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