DOI: 10.18129/B9.bioc.uncoverappLib  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see uncoverappLib.

Interactive graphical application for clinical assessment of sequence coverage at the base-pair level

Bioconductor version: 3.16

a Shiny application containing a suite of graphical and statistical tools to support clinical assessment of low coverage regions.It displays three web pages each providing a different analysis module: Coverage analysis, calculate AF by allele frequency app and binomial distribution. uncoverAPP provides a statisticl summary of coverage given target file or genes name.

Author: Emanuela Iovino [cre, aut], Tommaso Pippucci [aut]

Maintainer: Emanuela Iovino <emanuela.iovino at unibo.it>

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biocViews Annotation, Coverage, Software, Visualization
Version 1.8.1
In Bioconductor since BioC 3.12 (R-4.0) (2.5 years)
License MIT + file LICENSE
Imports markdown, shiny, shinyjs, shinyBS, shinyWidgets, shinycssloaders, DT, Gviz, Homo.sapiens, openxlsx, condformat, stringr, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg38.knownGene, BiocFileCache, rappdirs, TxDb.Hsapiens.UCSC.hg19.knownGene, rlist, utils, S4Vectors, EnsDb.Hsapiens.v75, EnsDb.Hsapiens.v86, OrganismDbi, processx, Rsamtools, GenomicRanges
Suggests BiocStyle, knitr, testthat, rmarkdown, dplyr
URL https://github.com/Manuelaio/uncoverappLib
BugReports https://github.com/Manuelaio/uncoverappLib/issues
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Source Package uncoverappLib_1.8.1.tar.gz
Windows Binary uncoverappLib_1.8.1.zip
macOS Binary (x86_64) uncoverappLib_1.8.1.tgz
macOS Binary (arm64) uncoverappLib_1.8.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/uncoverappLib
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/uncoverappLib
Bioc Package Browser https://code.bioconductor.org/browse/uncoverappLib/
Package Short Url https://bioconductor.org/packages/uncoverappLib/
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