DOI: 10.18129/B9.bioc.tripr  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see tripr.

T-cell Receptor/Immunoglobulin Profiler (TRIP)

Bioconductor version: 3.16

TRIP is a software framework that provides analytics services on antigen receptor (B cell receptor immunoglobulin, BcR IG | T cell receptor, TR) gene sequence data. It is a web application written in R Shiny. It takes as input the output files of the IMGT/HighV-Quest tool. Users can select to analyze the data from each of the input samples separately, or the combined data files from all samples and visualize the results accordingly.

Author: Maria Th. Kotouza [aut], Katerina Gemenetzi [aut], Chrysi Galigalidou [aut], Elisavet Vlachonikola [aut], Nikolaos Pechlivanis [cre], Andreas Agathangelidis [aut], Raphael Sandaltzopoulos [aut], Pericles A. Mitkas [aut], Kostas Stamatopoulos [aut], Anastasia Chatzidimitriou [aut], Fotis E. Psomopoulos [aut], Iason Ofeidis [aut]

Maintainer: Nikolaos Pechlivanis <inab.bioinformatics at>

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biocViews BatchEffect, GeneExpression, ImmunoOncology, MultipleComparison, Software, TargetedResequencing
Version 1.4.0
In Bioconductor since BioC 3.14 (R-4.1) (1.5 years)
License MIT + file LICENSE
Depends shiny (>= 1.6.0), shinyBS
Imports shinyjs, shinyFiles, plyr, data.table, DT, stringr, stringdist, plot3D, gridExtra, RColorBrewer, plotly, dplyr, pryr, config (>= 0.3.1), golem (>= 0.3.1), methods, grDevices, graphics, stats, utils
Suggests BiocGenerics, shinycssloaders, tidyverse, BiocManager, Biostrings, xtable, rlist, motifStack, knitr, rmarkdown, testthat (>= 3.0.0), fs, BiocStyle, RefManageR, biocthis
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