DOI: 10.18129/B9.bioc.transite  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see transite.

RNA-binding protein motif analysis

Bioconductor version: 3.16

transite is a computational method that allows comprehensive analysis of the regulatory role of RNA-binding proteins in various cellular processes by leveraging preexisting gene expression data and current knowledge of binding preferences of RNA-binding proteins.

Author: Konstantin Krismer [aut, cre, cph] , Anna Gattinger [aut] , Michael Yaffe [ths, cph] , Ian Cannell [ths]

Maintainer: Konstantin Krismer <krismer at>

Citation (from within R, enter citation("transite")):


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biocViews DifferentialExpression, GeneExpression, GeneSetEnrichment, Genetics, Microarray, Software, Transcription, mRNAMicroarray
Version 1.16.0
In Bioconductor since BioC 3.8 (R-3.5) (4.5 years)
License MIT + file LICENSE
Depends R (>= 3.5)
Imports BiocGenerics(>= 0.26.0), Biostrings(>= 2.48.0), dplyr (>= 0.7.6), GenomicRanges(>= 1.32.6), ggplot2 (>= 3.0.0), ggseqlogo (>= 0.1), grDevices, gridExtra (>= 2.3), methods, parallel, Rcpp (>=, scales (>= 1.0.0), stats, TFMPvalue (>= 0.0.8), utils
LinkingTo Rcpp (>=
Suggests knitr (>= 1.20), rmarkdown (>= 1.10), roxygen2 (>= 6.1.0), testthat (>= 2.1.0)
SystemRequirements C++11
Depends On Me
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