DOI: 10.18129/B9.bioc.tidySingleCellExperiment  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see tidySingleCellExperiment.

Brings SingleCellExperiment to the Tidyverse

Bioconductor version: 3.16

tidySingleCellExperiment is an adapter that abstracts the 'SingleCellExperiment' container in the form of tibble and allows the data manipulation, plotting and nesting using 'tidyverse'

Author: Stefano Mangiola [aut, cre]

Maintainer: Stefano Mangiola <mangiolastefano at gmail.com>

Citation (from within R, enter citation("tidySingleCellExperiment")):


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if (!require("BiocManager", quietly = TRUE))


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HTML R Script Overview of the tidySingleCellExperiment package
PDF   Reference Manual


biocViews AssayDomain, Clustering, DifferentialExpression, GeneExpression, Infrastructure, Normalization, QualityControl, RNASeq, Sequencing, Software
Version 1.8.2
In Bioconductor since BioC 3.12 (R-4.0) (2.5 years)
License GPL-3
Depends R (>= 4.0.0), ttservice, SingleCellExperiment
Imports SummarizedExperiment, dplyr, tibble, tidyr, ggplot2, plotly, magrittr, rlang, purrr, lifecycle, methods, utils, S4Vectors, tidyselect, ellipsis, pillar, stringr, cli, fansi
Suggests BiocStyle, testthat, knitr, markdown, SingleCellSignalR, SingleR, scater, scran, tidyHeatmap, igraph, GGally, Matrix, uwot, celldex, dittoSeq, EnsDb.Hsapiens.v86
URL https://github.com/stemangiola/tidySingleCellExperiment
BugReports https://github.com/stemangiola/tidySingleCellExperiment/issues
Depends On Me
Imports Me
Suggests Me sccomp
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package tidySingleCellExperiment_1.8.2.tar.gz
Windows Binary tidySingleCellExperiment_1.8.2.zip
macOS Binary (x86_64) tidySingleCellExperiment_1.8.2.tgz
macOS Binary (arm64) tidySingleCellExperiment_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/tidySingleCellExperiment
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tidySingleCellExperiment
Bioc Package Browser https://code.bioconductor.org/browse/tidySingleCellExperiment/
Package Short Url https://bioconductor.org/packages/tidySingleCellExperiment/
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