DOI: 10.18129/B9.bioc.spaSim  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see spaSim.

Spatial point data simulator for tissue images

Bioconductor version: 3.16

A suite of functions for simulating spatial patterns of cells in tissue images. Output images are multitype point data in SingleCellExperiment format. Each point represents a cell, with its 2D locations and cell type. Potential cell patterns include background cells, tumour/immune cell clusters, immune rings, and blood/lymphatic vessels.

Author: Yuzhou Feng [aut, cre] , Anna Trigos [aut]

Maintainer: Yuzhou Feng <yuzhou.feng at>

Citation (from within R, enter citation("spaSim")):


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biocViews BiomedicalInformatics, Software, Spatial, StatisticalMethod
Version 1.0.2
In Bioconductor since BioC 3.16 (R-4.2) (< 6 months)
License Artistic-2.0
Depends R (>= 4.2.0)
Imports ggplot2, methods, stats, dplyr, spatstat.geom, spatstat.random, SpatialExperiment, SummarizedExperiment, RANN
Suggests RefManageR, BiocStyle, knitr, testthat (>= 3.0.0), sessioninfo, rmarkdown, markdown
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