DOI: 10.18129/B9.bioc.similaRpeak  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see similaRpeak.

Metrics to estimate a level of similarity between two ChIP-Seq profiles

Bioconductor version: 3.16

This package calculates metrics which quantify the level of similarity between ChIP-Seq profiles. More specifically, the package implements six pseudometrics specialized in pattern similarity detection in ChIP-Seq profiles.

Author: Astrid DeschĂȘnes [cre, aut], Elsa Bernatchez [aut], Charles Joly Beauparlant [aut], Fabien Claude Lamaze [aut], Rawane Samb [aut], Pascal Belleau [aut], Arnaud Droit [aut]

Maintainer: Astrid DeschĂȘnes <adeschen at>

Citation (from within R, enter citation("similaRpeak")):


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HTML R Script Similarity between two ChIP-Seq profiles
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biocViews BiologicalQuestion, ChIPSeq, DifferentialExpression, Genetics, MultipleComparison, Software
Version 1.30.0
In Bioconductor since BioC 3.1 (R-3.2) (8 years)
License Artistic-2.0
Depends R6 (>= 2.0)
Imports stats
Suggests RUnit, BiocGenerics, knitr, Rsamtools, GenomicAlignments, rtracklayer, rmarkdown, BiocStyle
Depends On Me
Imports Me
Suggests Me metagene
Links To Me
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