DOI: 10.18129/B9.bioc.seqsetvis  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see seqsetvis.

Set Based Visualizations for Next-Gen Sequencing Data

Bioconductor version: 3.16

seqsetvis enables the visualization and analysis of sets of genomic sites in next gen sequencing data. Although seqsetvis was designed for the comparison of mulitple ChIP-seq samples, this package is domain-agnostic and allows the processing of multiple genomic coordinate files (bed-like files) and signal files (bigwig files pileups from bam file).

Author: Joseph R Boyd [aut, cre]

Maintainer: Joseph R Boyd <jrboyd at>

Citation (from within R, enter citation("seqsetvis")):


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biocViews ChIPSeq, MultipleComparison, Sequencing, Software, Visualization
Version 1.18.1
In Bioconductor since BioC 3.7 (R-3.5) (5 years)
License MIT + file LICENSE
Depends R (>= 3.6), ggplot2
Imports cowplot, data.table, eulerr, GenomeInfoDb, GenomicAlignments, GenomicRanges, ggplotify, grDevices, grid, IRanges, limma, methods, pbapply, pbmcapply, png, RColorBrewer, Rsamtools, rtracklayer, S4Vectors, stats, UpSetR
Suggests BiocFileCache, BiocManager, BiocStyle, ChIPpeakAnno, covr, knitr, rmarkdown, testthat
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