DOI: 10.18129/B9.bioc.seqPattern  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see seqPattern.

Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences

Bioconductor version: 3.16

Visualising oligonucleotide patterns and sequence motifs occurrences across a large set of sequences centred at a common reference point and sorted by a user defined feature.

Author: Vanja Haberle <vanja.haberle at>

Maintainer: Vanja Haberle <vanja.haberle at>

Citation (from within R, enter citation("seqPattern")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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PDF R Script seqPattern
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biocViews SequenceMatching, Software, Visualization
Version 1.30.0
In Bioconductor since BioC 3.1 (R-3.2) (8 years)
License GPL-3
Depends methods, R (>= 2.15.0)
Imports Biostrings, GenomicRanges, IRanges, KernSmooth, plotrix
Suggests BSgenome.Drerio.UCSC.danRer7, CAGEr, RUnit, BiocGenerics, BiocStyle
Enhances parallel
Depends On Me
Imports Me genomation
Suggests Me
Links To Me
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Source Package seqPattern_1.30.0.tar.gz
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