DOI: 10.18129/B9.bioc.selectKSigs  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see selectKSigs.

Selecting the number of mutational signatures using a perplexity-based measure and cross-validation

Bioconductor version: 3.16

A package to suggest the number of mutational signatures in a collection of somatic mutations using calculating the cross-validated perplexity score.

Author: Zhi Yang [aut, cre], Yuichi Shiraishi [ctb]

Maintainer: Zhi Yang <zyang895 at>

Citation (from within R, enter citation("selectKSigs")):


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biocViews Clustering, Sequencing, Software, SomaticMutation, StatisticalMethod
Version 1.10.0
In Bioconductor since BioC 3.11 (R-4.0) (3 years)
License GPL-3
Depends R (>= 3.6)
Imports HiLDA, magrittr, gtools, methods, Rcpp
LinkingTo Rcpp
Suggests knitr, rmarkdown, testthat, BiocStyle, ggplot2, dplyr, tidyr
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