DOI: 10.18129/B9.bioc.scTGIF  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see scTGIF.

Cell type annotation for unannotated single-cell RNA-Seq data

Bioconductor version: 3.16

scTGIF connects the cells and the related gene functions without cell type label.

Author: Koki Tsuyuzaki [aut, cre]

Maintainer: Koki Tsuyuzaki <k.t.the-answer at>

Citation (from within R, enter citation("scTGIF")):


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biocViews DimensionReduction, GeneExpression, QualityControl, SingleCell, Software
Version 1.12.0
In Bioconductor since BioC 3.10 (R-3.6) (3.5 years)
License Artistic-2.0
Depends R (>= 3.6.0)
Imports GSEABase, Biobase, SingleCellExperiment, BiocStyle, plotly, tagcloud, rmarkdown, Rcpp, grDevices, graphics, utils, knitr, S4Vectors, SummarizedExperiment, RColorBrewer, nnTensor, methods, scales, msigdbr, schex, tibble, ggplot2, igraph
Suggests testthat
Depends On Me
Imports Me
Suggests Me scTensor
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