DOI: 10.18129/B9.bioc.scClassify  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see scClassify.

scClassify: single-cell Hierarchical Classification

Bioconductor version: 3.16

scClassify is a multiscale classification framework for single-cell RNA-seq data based on ensemble learning and cell type hierarchies, enabling sample size estimation required for accurate cell type classification and joint classification of cells using multiple references.

Author: Yingxin Lin

Maintainer: Yingxin Lin <yingxin.lin at>

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biocViews Classification, GeneExpression, SingleCell, Software
Version 1.10.0
In Bioconductor since BioC 3.11 (R-4.0) (3 years)
License GPL-3
Depends R (>= 4.0)
Imports S4Vectors, limma, ggraph, igraph, methods, cluster, minpack.lm, mixtools, BiocParallel, proxy, proxyC, Matrix, ggplot2, hopach, diptest, mgcv, stats, graphics, statmod, Cepo
Suggests knitr, rmarkdown, BiocStyle, pkgdown
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