DOI: 10.18129/B9.bioc.rpx  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see rpx.

R Interface to the ProteomeXchange Repository

Bioconductor version: 3.16

The rpx package implements an interface to proteomics data submitted to the ProteomeXchange consortium.

Author: Laurent Gatto

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("rpx")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script An R interface to the ProteomeXchange repository
PDF   Reference Manual
Text   NEWS


biocViews DataImport, ImmunoOncology, MassSpectrometry, Proteomics, Software, ThirdPartyClient
Version 2.6.3
In Bioconductor since BioC 2.14 (R-3.1) (9 years)
License GPL-2
Depends methods
Imports BiocFileCache, jsonlite, xml2, RCurl, curl, utils
Suggests Biostrings, BiocStyle, testthat, knitr, rmarkdown
URL https://github.com/lgatto/rpx
BugReports https://github.com/lgatto/rpx/issues
Depends On Me
Imports Me
Suggests Me MsExperiment, MSnbase, PSMatch, RforProteomics
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rpx_2.6.3.tar.gz
Windows Binary rpx_2.6.3.zip (64-bit only)
macOS Binary (x86_64) rpx_2.6.3.tgz
macOS Binary (arm64) rpx_2.6.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/rpx
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rpx
Bioc Package Browser https://code.bioconductor.org/browse/rpx/
Package Short Url https://bioconductor.org/packages/rpx/
Package Downloads Report Download Stats

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