DOI: 10.18129/B9.bioc.roar  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see roar.

Identify differential APA usage from RNA-seq alignments

Bioconductor version: 3.16

Identify preferential usage of APA sites, comparing two biological conditions, starting from known alternative sites and alignments obtained from standard RNA-seq experiments.

Author: Elena Grassi

Maintainer: Elena Grassi <grassi.e at>

Citation (from within R, enter citation("roar")):


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biocViews HighThroughputSequencing, RNAseq, Sequencing, Software, Transcription
Version 1.34.0
In Bioconductor since BioC 2.14 (R-3.1) (9 years)
License GPL-3
Depends R (>= 3.0.1)
Imports methods, BiocGenerics, S4Vectors, IRanges, GenomicRanges, SummarizedExperiment, GenomicAlignments(>= 0.99.4), rtracklayer, GenomeInfoDb
Suggests RNAseqData.HNRNPC.bam.chr14, testthat
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