DOI: 10.18129/B9.bioc.rnaseqcomp  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see rnaseqcomp.

Benchmarks for RNA-seq Quantification Pipelines

Bioconductor version: 3.16

Several quantitative and visualized benchmarks for RNA-seq quantification pipelines. Two-condition quantifications for genes, transcripts, junctions or exons by each pipeline with necessary meta information should be organized into numeric matrices in order to proceed the evaluation.

Author: Mingxiang Teng and Rafael A. Irizarry

Maintainer: Mingxiang Teng <tengmx at gmail.com>

Citation (from within R, enter citation("rnaseqcomp")):


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biocViews QualityControl, RNASeq, Software, Visualization
Version 1.28.0
In Bioconductor since BioC 3.2 (R-3.2) (7.5 years)
License GPL-3
Depends R (>= 3.2.0)
Imports RColorBrewer, methods
Suggests BiocStyle, knitr, rmarkdown
URL https://github.com/tengmx/rnaseqcomp
Depends On Me
Imports Me
Suggests Me SummarizedBenchmark
Links To Me
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Source Package rnaseqcomp_1.28.0.tar.gz
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