DOI: 10.18129/B9.bioc.rnaEditr  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see rnaEditr.

Statistical analysis of RNA editing sites and hyper-editing regions

Bioconductor version: 3.16

RNAeditr analyzes site-specific RNA editing events, as well as hyper-editing regions. The editing frequencies can be tested against binary, continuous or survival outcomes. Multiple covariate variables as well as interaction effects can also be incorporated in the statistical models.

Author: Lanyu Zhang [aut, cre], Gabriel Odom [aut], Tiago Silva [aut], Lissette Gomez [aut], Lily Wang [aut]

Maintainer: Lanyu Zhang <jennyzly2016 at gmail.com>

Citation (from within R, enter citation("rnaEditr")):


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biocViews DimensionReduction, Epigenetics, FeatureExtraction, GeneTarget, RNASeq, Regression, Software, Survival
Version 1.8.0
In Bioconductor since BioC 3.12 (R-4.0) (2.5 years)
License GPL-3
Depends R (>= 4.0)
Imports GenomicRanges, IRanges, BiocGenerics, GenomeInfoDb, bumphunter, S4Vectors, stats, survival, logistf, plyr, corrplot
Suggests knitr, rmarkdown, testthat
URL https://github.com/TransBioInfoLab/rnaEditr
BugReports https://github.com/TransBioInfoLab/rnaEditr/issues
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Source Package rnaEditr_1.8.0.tar.gz
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Bioc Package Browser https://code.bioconductor.org/browse/rnaEditr/
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