DOI: 10.18129/B9.bioc.rfaRm  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see rfaRm.

An R interface to the Rfam database

Bioconductor version: 3.16

rfaRm provides a client interface to the Rfam database of RNA families. Data that can be retrieved include RNA families, secondary structure images, covariance models, sequences within each family, alignments leading to the identification of a family and secondary structures in the dot-bracket format.

Author: Lara Selles Vidal, Rafael Ayala, Guy-Bart Stan, Rodrigo Ledesma-Amaro

Maintainer: Lara Selles Vidal <lara.selles at oist.jp>, Rafael Ayala <rafael.ayala at oist.jp>

Citation (from within R, enter citation("rfaRm")):


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biocViews DataImport, FunctionalGenomics, MultipleSequenceAlignment, Software, ThirdPartyClient, Visualization
Version 1.10.2
In Bioconductor since BioC 3.11 (R-4.0) (3 years)
License GPL-3
Imports httr, stringi, rsvg, magick, data.table, Biostrings, utils, rvest, xml2, IRanges, S4Vectors
Suggests R4RNA, treeio, knitr, BiocStyle, rmarkdown, BiocGenerics
Depends On Me
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Source Package rfaRm_1.10.2.tar.gz
Windows Binary rfaRm_1.10.2.zip
macOS Binary (x86_64) rfaRm_1.10.2.tgz
macOS Binary (arm64) rfaRm_1.10.2.tgz
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Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rfaRm
Bioc Package Browser https://code.bioconductor.org/browse/rfaRm/
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