DOI: 10.18129/B9.bioc.rfPred  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see rfPred.

Assign rfPred functional prediction scores to a missense variants list

Bioconductor version: 3.16

Based on external numerous data files where rfPred scores are pre-calculated on all genomic positions of the human exome, the package gives rfPred scores to missense variants identified by the chromosome, the position (hg19 version), the referent and alternative nucleotids and the uniprot identifier of the protein. Note that for using the package, the user has to download the TabixFile and index (approximately 3.3 Go).

Author: Fabienne Jabot-Hanin, Hugo Varet and Jean-Philippe Jais

Maintainer: Hugo Varet <varethugo at gmail.com>

Citation (from within R, enter citation("rfPred")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews Annotation, Classification, Software
Version 1.36.0
In Bioconductor since BioC 2.13 (R-3.0) (9.5 years)
License GPL (>=2 )
Depends R (>= 3.5.0), methods
Imports utils, GenomeInfoDb, data.table, IRanges, GenomicRanges, parallel, Rsamtools
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Depends On Me
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Source Package rfPred_1.36.0.tar.gz
Windows Binary rfPred_1.36.0.zip (64-bit only)
macOS Binary (x86_64) rfPred_1.36.0.tgz
macOS Binary (arm64) rfPred_1.36.0.tgz
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Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rfPred
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