DOI: 10.18129/B9.bioc.regioneR  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see regioneR.

Association analysis of genomic regions based on permutation tests

Bioconductor version: 3.16

regioneR offers a statistical framework based on customizable permutation tests to assess the association between genomic region sets and other genomic features.

Author: Anna Diez-Villanueva <adiez at>, Roberto Malinverni <roberto.malinverni at> and Bernat Gel <bgel at>

Maintainer: Bernat Gel <bgel at>

Citation (from within R, enter citation("regioneR")):


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biocViews ChIPSeq, CopyNumberVariation, DNASeq, Genetics, MethylSeq, Software
Version 1.30.0
In Bioconductor since BioC 3.1 (R-3.2) (8 years)
License Artistic-2.0
Depends GenomicRanges
Imports memoise, GenomicRanges, IRanges, BSgenome, Biostrings, rtracklayer, parallel, graphics, stats, utils, methods, GenomeInfoDb, S4Vectors, tools
Suggests BiocStyle, knitr, rmarkdown, BSgenome.Hsapiens.UCSC.hg19.masked, testthat
Depends On Me karyoploteR, regioneReloaded
Imports Me annotatr, ChIPpeakAnno, CNVfilteR, CopyNumberPlots, karyoploteR, RgnTX, RIPAT, RLSeq, UMI4Cats
Suggests Me CNVRanger, EpiMix
Links To Me
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