DOI: 10.18129/B9.bioc.qckitfastq  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see qckitfastq.

FASTQ Quality Control

Bioconductor version: 3.16

Assessment of FASTQ file format with multiple metrics including quality score, sequence content, overrepresented sequence and Kmers.

Author: Wenyue Xing [aut], August Guang [aut, cre]

Maintainer: August Guang <august.guang at gmail.com>

Citation (from within R, enter citation("qckitfastq")):


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if (!require("BiocManager", quietly = TRUE))


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PDF R Script Quality control analysis and visualization using qckitfastq
PDF   Reference Manual
Text   NEWS


biocViews QualityControl, Sequencing, Software
Version 1.14.0
In Bioconductor since BioC 3.9 (R-3.6) (4 years)
License Artistic-2.0
Imports magrittr, ggplot2, dplyr, seqTools, zlibbioc, data.table, reshape2, grDevices, graphics, stats, utils, Rcpp, rlang, RSeqAn
LinkingTo Rcpp, RSeqAn
Suggests knitr, rmarkdown, kableExtra, testthat
SystemRequirements GNU make
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package qckitfastq_1.14.0.tar.gz
Windows Binary qckitfastq_1.13.0.zip
macOS Binary (x86_64) qckitfastq_1.14.0.tgz
macOS Binary (arm64) qckitfastq_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/qckitfastq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/qckitfastq
Bioc Package Browser https://code.bioconductor.org/browse/qckitfastq/
Package Short Url https://bioconductor.org/packages/qckitfastq/
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