DOI: 10.18129/B9.bioc.pulsedSilac  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see pulsedSilac.

Analysis of pulsed-SILAC quantitative proteomics data

Bioconductor version: 3.16

This package provides several tools for pulsed-SILAC data analysis. Functions are provided to organize the data, calculate isotope ratios, isotope fractions, model protein turnover, compare turnover models, estimate cell growth and estimate isotope recycling. Several visualization tools are also included to do basic data exploration, quality control, condition comparison, individual model inspection and model comparison.

Author: Marc Pagès-Gallego, Tobias B. Dansen

Maintainer: Marc Pagès-Gallego <M.PagesGallego at umcutrecht.nl>

Citation (from within R, enter citation("pulsedSilac")):


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biocViews Proteomics, Software
Version 1.12.0
In Bioconductor since BioC 3.10 (R-3.6) (3.5 years)
License GPL-3
Depends R (>= 3.6.0)
Imports robustbase, methods, R.utils, taRifx, S4Vectors, SummarizedExperiment, ggplot2, ggridges, stats, utils, UpSetR, cowplot, grid, MuMIn
Suggests testthat (>= 2.1.0), knitr, rmarkdown, gridExtra
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