DOI: 10.18129/B9.bioc.phantasus  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see phantasus.

Visual and interactive gene expression analysis

Bioconductor version: 3.16

Phantasus is a web-application for visual and interactive gene expression analysis. Phantasus is based on Morpheus – a web-based software for heatmap visualisation and analysis, which was integrated with an R environment via OpenCPU API. Aside from basic visualization and filtering methods, R-based methods such as k-means clustering, principal component analysis or differential expression analysis with limma package are supported.

Author: Daria Zenkova [aut], Vladislav Kamenev [aut], Rita Sablina [ctb], Maxim Kleverov [ctb], Maxim Artyomov [aut], Alexey Sergushichev [aut, cre]

Maintainer: Alexey Sergushichev <alsergbox at>

Citation (from within R, enter citation("phantasus")):


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biocViews Clustering, DataRepresentation, DifferentialExpression, GUI, GeneExpression, ImmunoOncology, Microarray, Normalization, PrincipalComponent, RNASeq, Software, Transcriptomics, Visualization
Version 1.18.4
In Bioconductor since BioC 3.7 (R-3.5) (5 years)
License MIT + file LICENSE
Depends R (>= 3.5)
Imports ggplot2, protolite, Biobase, GEOquery, Rook, htmltools, httpuv, jsonlite, limma, opencpu, assertthat, methods, httr, rhdf5, utils, parallel, stringr, fgsea(>= 1.9.4), svglite, gtable, stats, Matrix, pheatmap, scales, ccaPP, grid, grDevices, AnnotationDbi, DESeq2, data.table, curl
Suggests testthat, BiocStyle, knitr, rmarkdown
Depends On Me
Imports Me
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