DOI: 10.18129/B9.bioc.peakPantheR  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see peakPantheR.

Peak Picking and Annotation of High Resolution Experiments

Bioconductor version: 3.16

An automated pipeline for the detection, integration and reporting of predefined features across a large number of mass spectrometry data files. It enables the real time annotation of multiple compounds in a single file, or the parallel annotation of multiple compounds in multiple files. A graphical user interface as well as command line functions will assist in assessing the quality of annotation and update fitting parameters until a satisfactory result is obtained.

Author: Arnaud Wolfer [aut, cre] , Goncalo Correia [aut] , Jake Pearce [ctb], Caroline Sands [ctb]

Maintainer: Arnaud Wolfer <adwolfer at>

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HTML R Script Getting Started with the peakPantheR package
HTML R Script Parallel Annotation
HTML R Script peakPantheR Graphical User Interface
HTML R Script Real Time Annotation
PDF   Reference Manual
Text   NEWS


biocViews MassSpectrometry, Metabolomics, PeakDetection, Software
Version 1.12.2
In Bioconductor since BioC 3.10 (R-3.6) (3.5 years)
License GPL-3
Depends R (>= 4.2)
Imports foreach (>= 1.4.4), doParallel (>= 1.0.11), ggplot2 (>= 3.3.0), gridExtra (>= 2.3), MSnbase(>= 2.4.0), mzR(>= 2.12.0), stringr (>= 1.2.0), methods (>= 3.4.0), XML (>=, minpack.lm (>= 1.2.1), scales (>= 0.5.0), shiny (>= 1.0.5), bslib, shinycssloaders (>= 1.0.0), DT (>= 0.15), pracma (>= 2.2.3), utils, lubridate
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