DOI: 10.18129/B9.bioc.pandaR  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see pandaR.

PANDA Algorithm

Bioconductor version: 3.16

Runs PANDA, an algorithm for discovering novel network structure by combining information from multiple complementary data sources.

Author: Dan Schlauch, Joseph N. Paulson, Albert Young, John Quackenbush, Kimberly Glass

Maintainer: Joseph N. Paulson <paulson.joseph at>, Dan Schlauch <dschlauch at>

Citation (from within R, enter citation("pandaR")):


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HTML R Script pandaR Package
PDF   Reference Manual


biocViews GeneExpression, GeneRegulation, GraphAndNetwork, Microarray, Network, NetworkInference, Software, StatisticalMethod, Transcription
Version 1.30.0
In Bioconductor since BioC 3.1 (R-3.2) (8 years)
License GPL-2
Depends R (>= 3.0.0), methods, Biobase, BiocGenerics
Imports matrixStats, igraph, ggplot2, grid, reshape, plyr, RUnit, hexbin
Suggests knitr, rmarkdown
Depends On Me netZooR
Imports Me
Suggests Me
Links To Me
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Source Package pandaR_1.30.0.tar.gz
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