DOI: 10.18129/B9.bioc.ndexr  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see ndexr.

NDEx R client library

Bioconductor version: 3.16

This package offers an interface to NDEx servers, e.g. the public server at http://ndexbio.org/. It can retrieve and save networks via the API. Networks are offered as RCX object and as igraph representation.

Author: Florian Auer <florian.auer at informatik.uni-augsburg.de>, Frank Kramer <frank.kramer at informatik.uni-augsburg.de>, Alex Ishkin <aleksandr.ishkin at thomsonreuters.com>, Dexter Pratt <depratt at ucsc.edu>

Maintainer: Florian Auer <florian.auer at informatik.uni-augsburg.de>

Citation (from within R, enter citation("ndexr")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script NDExR Vignette
PDF   Reference Manual
Text   NEWS


biocViews DataImport, Network, Pathways, Software
Version 1.20.1
In Bioconductor since BioC 3.6 (R-3.4) (5.5 years)
License BSD_3_clause
Depends RCX
Imports httr, jsonlite, plyr, tidyr
Suggests BiocStyle, testthat, knitr, rmarkdown
URL https://github.com/frankkramer-lab/ndexr
BugReports https://github.com/frankkramer-lab/ndexr/issues
Depends On Me
Imports Me
Suggests Me netgsa
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ndexr_1.20.1.tar.gz
Windows Binary ndexr_1.20.1.zip
macOS Binary (x86_64) ndexr_1.20.1.tgz
macOS Binary (arm64) ndexr_1.20.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/ndexr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ndexr
Bioc Package Browser https://code.bioconductor.org/browse/ndexr/
Package Short Url https://bioconductor.org/packages/ndexr/
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