DOI: 10.18129/B9.bioc.miaViz  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see miaViz.

Microbiome Analysis Plotting and Visualization

Bioconductor version: 3.16

The miaViz package implements plotting function to work with TreeSummarizedExperiment and related objects in a context of microbiome analysis. Among others this includes plotting tree, graph and microbiome series data. The package is part of the broader miaverse framework.

Author: Felix G.M. Ernst [aut] , Tuomas Borman [aut, cre] , Leo Lahti [aut]

Maintainer: Tuomas Borman <tuomas.v.borman at utu.fi>

Citation (from within R, enter citation("miaViz")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


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biocViews Microbiome, Software, Visualization
Version 1.6.0
In Bioconductor since BioC 3.13 (R-4.1) (2 years)
License Artistic-2.0 | file LICENSE
Depends R (>= 4.0), SummarizedExperiment, TreeSummarizedExperiment, mia(>= 0.99), ggplot2, ggraph (>= 2.0)
Imports methods, stats, S4Vectors, BiocGenerics, BiocParallel, DelayedArray, scater, ggtree, ggnewscale, viridis, tibble, tidytree, tidygraph, rlang, purrr, tidyr, dplyr, ape, DirichletMultinomial
Suggests knitr, rmarkdown, BiocStyle, testthat, patchwork, microbiomeDataSets
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Follow Installation instructions to use this package in your R session.

Source Package miaViz_1.6.0.tar.gz
Windows Binary miaViz_1.6.0.zip
macOS Binary (x86_64) miaViz_1.6.0.tgz
macOS Binary (arm64) miaViz_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/miaViz
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/miaViz
Bioc Package Browser https://code.bioconductor.org/browse/miaViz/
Package Short Url https://bioconductor.org/packages/miaViz/
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