DOI: 10.18129/B9.bioc.miRSM  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see miRSM.

Inferring miRNA sponge modules in heterogeneous data

Bioconductor version: 3.16

The package aims to identify miRNA sponge modules in heterogeneous data. It provides several functions to study miRNA sponge modules, including popular methods for inferring gene modules (candidate miRNA sponge modules), and a function to identify miRNA sponge modules, as well as several functions to conduct modular analysis of miRNA sponge modules.

Author: Junpeng Zhang [aut, cre]

Maintainer: Junpeng Zhang <zhangjunpeng411 at gmail.com>

Citation (from within R, enter citation("miRSM")):


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biocViews BiomedicalInformatics, Clustering, GeneExpression, GeneRegulation, GeneSetEnrichment, GeneTarget, Microarray, Software
Version 1.16.0
In Bioconductor since BioC 3.8 (R-3.5) (4.5 years)
License GPL-3
Depends R (>= 3.5.0)
Imports WGCNA, flashClust, dynamicTreeCut, GFA, igraph, linkcomm, MCL, NMF, biclust, iBBiG, fabia, BicARE, isa2, s4vd, BiBitR, rqubic, Biobase, PMA, stats, dbscan, subspace, mclust, SOMbrero, ppclust, miRspongeR, Rcpp, utils, SummarizedExperiment, GSEABase, org.Hs.eg.db, MatrixCorrelation, energy
Suggests BiocStyle, knitr, rmarkdown, testthat
URL https://github.com/zhangjunpeng411/miRSM
BugReports https://github.com/zhangjunpeng411/miRSM/issues
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Source Package miRSM_1.16.0.tar.gz
Windows Binary miRSM_1.16.0.zip
macOS Binary (x86_64) miRSM_1.16.0.tgz
macOS Binary (arm64) miRSM_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/miRSM
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/miRSM
Bioc Package Browser https://code.bioconductor.org/browse/miRSM/
Package Short Url https://bioconductor.org/packages/miRSM/
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