DOI: 10.18129/B9.bioc.methylCC  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see methylCC.

Estimate the cell composition of whole blood in DNA methylation samples

Bioconductor version: 3.16

A tool to estimate the cell composition of DNA methylation whole blood sample measured on any platform technology (microarray and sequencing).

Author: Stephanie C. Hicks [aut, cre] , Rafael Irizarry [aut]

Maintainer: Stephanie C. Hicks <shicks19 at>

Citation (from within R, enter citation("methylCC")):


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biocViews DNAMethylation, MethylSeq, MethylationArray, Microarray, Sequencing, Software, WholeGenome
Version 1.12.0
In Bioconductor since BioC 3.10 (R-3.6) (3.5 years)
License CC BY 4.0
Depends R (>= 3.6), FlowSorted.Blood.450k
Imports Biobase, GenomicRanges, IRanges, S4Vectors, dplyr, magrittr, minfi, bsseq, quadprog, plyranges, stats, utils, bumphunter, genefilter, methods, IlluminaHumanMethylation450kmanifest, IlluminaHumanMethylation450kanno.ilmn12.hg19
Suggests rmarkdown, knitr, testthat (>= 2.1.0), BiocGenerics, BiocStyle, tidyr, ggplot2
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