DOI: 10.18129/B9.bioc.methimpute  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see methimpute.

Imputation-guided re-construction of complete methylomes from WGBS data

Bioconductor version: 3.16

This package implements functions for calling methylation for all cytosines in the genome.

Author: Aaron Taudt

Maintainer: Aaron Taudt <aaron.taudt at>

Citation (from within R, enter citation("methimpute")):


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PDF R Script Methylation status calling with METHimpute
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biocViews Coverage, DNAMethylation, Epigenetics, HiddenMarkovModel, ImmunoOncology, Sequencing, Software
Version 1.20.0
In Bioconductor since BioC 3.6 (R-3.4) (5.5 years)
License Artistic-2.0
Depends R (>= 3.5.0), GenomicRanges, ggplot2
Imports Rcpp (>=, methods, utils, grDevices, stats, GenomeInfoDb, IRanges, Biostrings, reshape2, minpack.lm, data.table
LinkingTo Rcpp
Suggests knitr, BiocStyle
Depends On Me
Imports Me
Suggests Me
Links To Me
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