DOI: 10.18129/B9.bioc.mBPCR  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see mBPCR.

Bayesian Piecewise Constant Regression for DNA copy number estimation

Bioconductor version: 3.16

It contains functions for estimating the DNA copy number profile using mBPCR with the aim of detecting regions with copy number changes.

Author: P.M.V. Rancoita <rancoita.paola at gmail.com>, with contributions from M. Hutter <marcus.hutter at anu.edu.au>

Maintainer: P.M.V. Rancoita <rancoita.paola at gmail.com>

Citation (from within R, enter citation("mBPCR")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


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PDF R Script mBPCR
PDF   Reference Manual


biocViews CopyNumberVariation, Microarray, SNP, Software, aCGH
Version 1.52.0
In Bioconductor since BioC 2.5 (R-2.10) (13.5 years)
License GPL (>= 2)
Depends oligoClasses, GWASTools
Imports Biobase, graphics, methods, utils, grDevices
Suggests xtable
URL http://www.idsia.ch/~paola/mBPCR
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package mBPCR_1.52.0.tar.gz
Windows Binary mBPCR_1.52.0.zip
macOS Binary (x86_64) mBPCR_1.52.0.tgz
macOS Binary (arm64) mBPCR_1.52.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/mBPCR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mBPCR
Bioc Package Browser https://code.bioconductor.org/browse/mBPCR/
Package Short Url https://bioconductor.org/packages/mBPCR/
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