DOI: 10.18129/B9.bioc.loci2path  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see loci2path.

Loci2path: regulatory annotation of genomic intervals based on tissue-specific expression QTLs

Bioconductor version: 3.16

loci2path performs statistics-rigorous enrichment analysis of eQTLs in genomic regions of interest. Using eQTL collections provided by the Genotype-Tissue Expression (GTEx) project and pathway collections from MSigDB.

Author: Tianlei Xu

Maintainer: Tianlei Xu <tianlei.xu at emory.edu>

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biocViews BioCarta, Coverage, FunctionalGenomics, GeneExpression, GeneSetEnrichment, Genetics, Sequencing, Software
Version 1.18.0
In Bioconductor since BioC 3.7 (R-3.5) (5 years)
License Artistic-2.0
Depends R (>= 3.5.0)
Imports pheatmap, wordcloud, RColorBrewer, data.table, methods, grDevices, stats, graphics, GenomicRanges, BiocParallel, S4Vectors
Suggests BiocStyle, knitr, rmarkdown
URL https://github.com/StanleyXu/loci2path
BugReports https://github.com/StanleyXu/loci2path/issues
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Source Package loci2path_1.18.0.tar.gz
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