DOI: 10.18129/B9.bioc.lisaClust  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see lisaClust.

lisaClust: Clustering of Local Indicators of Spatial Association

Bioconductor version: 3.16

lisaClust provides a series of functions to identify and visualise regions of tissue where spatial associations between cell-types is similar. This package can be used to provide a high-level summary of cell-type colocalization in multiplexed imaging data that has been segmented at a single-cell resolution.

Author: Ellis Patrick [aut, cre], Nicolas Canete [aut]

Maintainer: Ellis Patrick <ellis.patrick at>

Citation (from within R, enter citation("lisaClust")):


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biocViews CellBasedAssays, SingleCell, Software, Spatial
Version 1.6.3
In Bioconductor since BioC 3.13 (R-4.1) (2 years)
License GPL (>=2)
Depends R (>= 4.0)
Imports ggplot2, class, concaveman, grid, BiocParallel, spatstat.explore, spatstat.geom, BiocGenerics, S4Vectors, methods, spicyR, purrr, stats, data.table, dplyr, tidyr, SingleCellExperiment, SpatialExperiment, SummarizedExperiment, pheatmap
Suggests BiocStyle, knitr, rmarkdown
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