DOI: 10.18129/B9.bioc.infercnv  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see infercnv.

Infer Copy Number Variation from Single-Cell RNA-Seq Data

Bioconductor version: 3.16

Using single-cell RNA-Seq expression to visualize CNV in cells.

Author: Timothy Tickle [aut], Itay Tirosh [aut], Christophe Georgescu [aut, cre], Maxwell Brown [aut], Brian Haas [aut]

Maintainer: Christophe Georgescu <cgeorges at>

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biocViews Bayesian, CopyNumberVariation, Genetics, GenomicVariation, HiddenMarkovModel, SingleCell, Software, StatisticalMethod, StructuralVariation, Transcriptomics, VariantDetection
Version 1.14.2
In Bioconductor since BioC 3.9 (R-3.6) (4 years)
License BSD_3_clause + file LICENSE
Depends R (>= 4.0)
Imports graphics, grDevices, RColorBrewer, gplots, futile.logger, stats, utils, methods, ape, phyclust, Matrix, fastcluster, parallelDist, dplyr, HiddenMarkov, ggplot2, edgeR, coin, caTools, digest, RANN, igraph, reshape2, rjags, fitdistrplus, future, foreach, doParallel, Seurat, BiocGenerics, SummarizedExperiment, SingleCellExperiment, tidyr, parallel, coda, gridExtra, argparse
Suggests BiocStyle, knitr, rmarkdown, testthat
SystemRequirements JAGS 4.x.y
Depends On Me
Imports Me
Suggests Me SCpubr
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