DOI: 10.18129/B9.bioc.igvR  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see igvR.

igvR: integrative genomics viewer

Bioconductor version: 3.16

Access to igv.js, the Integrative Genomics Viewer running in a web browser.

Author: Paul Shannon

Maintainer: Paul Shannon <paul.thurmond.shannon at gmail.com>

Citation (from within R, enter citation("igvR")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script Explore CTCF ChIP-seq alignments, MACS2 narrowPeaks, Motif Matching and H3K4me3 methylation
HTML R Script GWAS Tracks
HTML R Script Introduction: a simple demo
HTML R Script Obtain and Display H3K27ac K562 track from the AnnotationHub
HTML R Script Obtain and Display H3K4Me3 K562 track from UCSC table browser
HTML R Script Paired-end Interaction Tracks
HTML R Script Use a Custom Genome
HTML R Script Use a Stock Genome
PDF   Reference Manual
Text   NEWS


biocViews GenomeBrowsers, Software, ThirdPartyClient, Visualization
Version 1.18.1
In Bioconductor since BioC 3.7 (R-3.5) (5 years)
License MIT + file LICENSE
Depends R (>= 3.5.0), GenomicRanges, GenomicAlignments, BrowserViz(>= 2.17.1)
Imports methods, BiocGenerics, httpuv, utils, rtracklayer, VariantAnnotation, RColorBrewer, httr
Suggests RUnit, BiocStyle, knitr, rmarkdown, MotifDb, seqLogo
URL https://paul-shannon.github.io/igvR/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package igvR_1.18.1.tar.gz
Windows Binary igvR_1.18.1.zip (64-bit only)
macOS Binary (x86_64) igvR_1.18.1.tgz
macOS Binary (arm64) igvR_1.18.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/igvR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/igvR
Bioc Package Browser https://code.bioconductor.org/browse/igvR/
Package Short Url https://bioconductor.org/packages/igvR/
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