DOI: 10.18129/B9.bioc.idpr  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see idpr.

Profiling and Analyzing Intrinsically Disordered Proteins in R

Bioconductor version: 3.16

‘idpr’ aims to integrate tools for the computational analysis of intrinsically disordered proteins (IDPs) within R. This package is used to identify known characteristics of IDPs for a sequence of interest with easily reported and dynamic results. Additionally, this package includes tools for IDP-based sequence analysis to be used in conjunction with other R packages.

Author: William M. McFadden [cre, aut], Judith L. Yanowitz [aut, fnd], Michael Buszczak [ctb, fnd]

Maintainer: William M. McFadden <wmm27 at>

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HTML R Script Charge and Hydropathy Vignette
HTML R Script Disordered Matrices Vignette
HTML R Script idpr Package Overview Vignette
HTML R Script IUPred Vignette
HTML R Script Sequence Map Vignette
HTML R Script Structural Tendency Vignette
PDF   Reference Manual


biocViews CellBiology, Proteomics, Software, StructuralPrediction
Version 1.8.0
In Bioconductor since BioC 3.12 (R-4.0) (2.5 years)
License LGPL (>= 3)
Depends R (>= 4.1.0)
Imports ggplot2 (>= 3.3.0), magrittr (>= 1.5), dplyr (>= 0.8.5), plyr (>= 1.8.6), jsonlite (>= 1.6.1), rlang (>= 0.4.6), Biostrings(>= 2.56.0), methods (>= 4.0.0)
Suggests knitr, rmarkdown, msa, ape, testthat, seqinr
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