DOI: 10.18129/B9.bioc.genefu  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see genefu.

Computation of Gene Expression-Based Signatures in Breast Cancer

Bioconductor version: 3.16

This package contains functions implementing various tasks usually required by gene expression analysis, especially in breast cancer studies: gene mapping between different microarray platforms, identification of molecular subtypes, implementation of published gene signatures, gene selection, and survival analysis.

Author: Deena M.A. Gendoo [aut], Natchar Ratanasirigulchai [aut], Markus S. Schroeder [aut], Laia Pare [aut], Joel S Parker [aut], Aleix Prat [aut], Nikta Feizi [ctb], Christopher Eeles [ctb], Benjamin Haibe-Kains [aut, cre]

Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains at>

Citation (from within R, enter citation("genefu")):


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biocViews Classification, Clustering, DifferentialExpression, GeneExpression, Software, Visualization
Version 2.30.0
In Bioconductor since BioC 2.8 (R-2.13) (12 years)
License Artistic-2.0
Depends R (>= 4.1), survcomp, biomaRt, iC10, AIMS
Imports amap, impute, mclust, limma, graphics, stats, utils
Suggests GeneMeta, breastCancerVDX, breastCancerMAINZ, breastCancerTRANSBIG, breastCancerUPP, breastCancerUNT, breastCancerNKI, rmeta, Biobase, xtable, knitr, caret, survival, BiocStyle, magick, rmarkdown
Depends On Me
Imports Me consensusOV, PDATK
Suggests Me breastCancerMAINZ, breastCancerNKI, breastCancerTRANSBIG, breastCancerUNT, breastCancerUPP, breastCancerVDX, GSgalgoR
Links To Me
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