DOI: 10.18129/B9.bioc.gcatest  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see gcatest.

Genotype Conditional Association TEST

Bioconductor version: 3.16

GCAT is an association test for genome wide association studies that controls for population structure under a general class of trait. models.

Author: Wei Hao, Minsun Song, John D. Storey

Maintainer: Wei Hao <whao at princeton.edu>, John D. Storey <jstorey at princeton.edu>

Citation (from within R, enter citation("gcatest")):


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PDF R Script gcat Package
PDF   Reference Manual


biocViews DimensionReduction, GenomeWideAssociation, PrincipalComponent, SNP, Software
Version 1.28.2
In Bioconductor since BioC 3.2 (R-3.2) (7.5 years)
License GPL-3
Depends R (>= 3.2)
Imports lfa
Suggests knitr, ggplot2
URL https://github.com/StoreyLab/gcatest
BugReports https://github.com/StoreyLab/gcatest/issues
Depends On Me
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