DOI: 10.18129/B9.bioc.epigenomix  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see epigenomix.

Epigenetic and gene transcription data normalization and integration with mixture models

Bioconductor version: 3.16

A package for the integrative analysis of RNA-seq or microarray based gene transcription and histone modification data obtained by ChIP-seq. The package provides methods for data preprocessing and matching as well as methods for fitting bayesian mixture models in order to detect genes with differences in both data types.

Author: Hans-Ulrich Klein, Martin Schaefer

Maintainer: Hans-Ulrich Klein <h.klein at uni-muenster.de>

Citation (from within R, enter citation("epigenomix")):


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PDF R Script epigenomix package vignette
PDF   Reference Manual


biocViews ChIPSeq, Classification, DifferentialExpression, GeneExpression, Software
Version 1.38.0
In Bioconductor since BioC 2.12 (R-3.0) (10 years)
License LGPL-3
Depends R (>= 3.5.0), methods, Biobase, S4Vectors, IRanges, GenomicRanges, SummarizedExperiment
Imports BiocGenerics, MCMCpack, Rsamtools, parallel, GenomeInfoDb, beadarray
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Source Package epigenomix_1.38.0.tar.gz
Windows Binary epigenomix_1.38.0.zip
macOS Binary (x86_64) epigenomix_1.38.0.tgz
macOS Binary (arm64) epigenomix_1.38.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/epigenomix
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/epigenomix
Bioc Package Browser https://code.bioconductor.org/browse/epigenomix/
Package Short Url https://bioconductor.org/packages/epigenomix/
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