DOI: 10.18129/B9.bioc.diffUTR  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see diffUTR.

diffUTR: Streamlining differential exon and 3' UTR usage

Bioconductor version: 3.16

The diffUTR package provides a uniform interface and plotting functions for limma/edgeR/DEXSeq -powered differential bin/exon usage. It includes in addition an improved version of the limma::diffSplice method. Most importantly, diffUTR further extends the application of these frameworks to differential UTR usage analysis using poly-A site databases.

Author: Pierre-Luc Germain [cre, aut] , Stefan Gerber [aut]

Maintainer: Pierre-Luc Germain <pierre-luc.germain at hest.ethz.ch>

Citation (from within R, enter citation("diffUTR")):


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biocViews GeneExpression, Software
Version 1.6.0
In Bioconductor since BioC 3.13 (R-4.1) (2 years)
License GPL-3
Depends R (>= 4.0)
Imports S4Vectors, SummarizedExperiment, limma, edgeR, DEXSeq, GenomicRanges, Rsubread, ggplot2, rtracklayer, ComplexHeatmap, ggrepel, stringi, methods, stats, GenomeInfoDb, dplyr, matrixStats, IRanges, ensembldb, viridisLite
Suggests BiocStyle, knitr, rmarkdown
BugReports https://github.com/ETHZ-INS/diffUTR
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Source Package diffUTR_1.6.0.tar.gz
Windows Binary diffUTR_1.6.0.zip
macOS Binary (x86_64) diffUTR_1.6.0.tgz
macOS Binary (arm64) diffUTR_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/diffUTR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/diffUTR
Bioc Package Browser https://code.bioconductor.org/browse/diffUTR/
Package Short Url https://bioconductor.org/packages/diffUTR/
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