DOI: 10.18129/B9.bioc.derfinderPlot  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see derfinderPlot.

Plotting functions for derfinder

Bioconductor version: 3.16

This package provides plotting functions for results from the derfinder package. This helps separate the graphical dependencies required for making these plots from the core functionality of derfinder.

Author: Leonardo Collado-Torres [aut, cre] , Andrew E. Jaffe [aut] , Jeffrey T. Leek [aut, ths]

Maintainer: Leonardo Collado-Torres <lcolladotor at>

Citation (from within R, enter citation("derfinderPlot")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script Introduction to derfinderPlot
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biocViews DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software, Visualization
Version 1.32.0
In Bioconductor since BioC 3.0 (R-3.1) (8.5 years)
License Artistic-2.0
Depends R (>= 3.2)
Imports derfinder(>= 1.1.0), GenomeInfoDb(>= 1.3.3), GenomicFeatures, GenomicRanges(>= 1.17.40), ggbio(>= 1.13.13), ggplot2, graphics, grDevices, IRanges(>= 1.99.28), limma, methods, plyr, RColorBrewer, reshape2, S4Vectors(>= 0.9.38), scales, utils
Suggests biovizBase(>= 1.27.2), bumphunter(>= 1.7.6), derfinderData(>= 0.99.0), sessioninfo, knitr (>= 1.6), BiocStyle(>= 2.5.19),, RefManageR, rmarkdown (>= 0.3.3), testthat, TxDb.Hsapiens.UCSC.hg19.knownGene, covr
Depends On Me
Imports Me brainflowprobes, recountWorkflow
Suggests Me derfinder, GenomicState, regionReport
Links To Me
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Source Package derfinderPlot_1.32.0.tar.gz
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