DOI: 10.18129/B9.bioc.dStruct  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see dStruct.

Identifying differentially reactive regions from RNA structurome profiling data

Bioconductor version: 3.16

dStruct identifies differentially reactive regions from RNA structurome profiling data. dStruct is compatible with a broad range of structurome profiling technologies, e.g., SHAPE-MaP, DMS-MaPseq, Structure-Seq, SHAPE-Seq, etc. See Choudhary et al, Genome Biology, 2019 for the underlying method.

Author: Krishna Choudhary [aut, cre] , Sharon Aviran [aut]

Maintainer: Krishna Choudhary <kchoudhary at ucdavis.edu>

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biocViews Sequencing, Software, StatisticalMethod, StructuralPrediction
Version 1.4.0
In Bioconductor since BioC 3.14 (R-4.1) (1.5 years)
License GPL (>= 2)
Depends R (>= 4.1)
Imports zoo, ggplot2, purrr, reshape2, parallel, IRanges, S4Vectors, rlang, grDevices, stats, utils
Suggests BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
URL https://github.com/dataMaster-Kris/dStruct
BugReports https://github.com/dataMaster-Kris/dStruct/issues
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