DOI: 10.18129/  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see cn.farms.

cn.FARMS - factor analysis for copy number estimation

Bioconductor version: 3.16

This package implements the cn.FARMS algorithm for copy number variation (CNV) analysis. cn.FARMS allows to analyze the most common Affymetrix (250K-SNP6.0) array types, supports high-performance computing using snow and ff.

Author: Andreas Mitterecker, Djork-Arne Clevert

Maintainer: Andreas Mitterecker <mitterecker at>

Citation (from within R, enter citation("cn.farms")):


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biocViews CopyNumberVariation, Microarray, Software
Version 1.46.0
In Bioconductor since BioC 2.8 (R-2.13) (12 years)
License LGPL (>= 2.0)
Depends R (>= 3.0), Biobase, methods, ff, oligoClasses, snow
Imports DBI, affxparser, oligo, DNAcopy, preprocessCore, lattice
Suggests pd.mapping250k.sty, pd.mapping250k.nsp, pd.genomewidesnp.5, pd.genomewidesnp.6
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