DOI: 10.18129/B9.bioc.chimeraviz  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see chimeraviz.

Visualization tools for gene fusions

Bioconductor version: 3.16

chimeraviz manages data from fusion gene finders and provides useful visualization tools.

Author: Stian Lågstad [aut, cre], Sen Zhao [ctb], Andreas M. Hoff [ctb], Bjarne Johannessen [ctb], Ole Christian Lingjærde [ctb], Rolf Skotheim [ctb]

Maintainer: Stian Lågstad <stianlagstad at>

Citation (from within R, enter citation("chimeraviz")):


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biocViews Alignment, Infrastructure, Software
Version 1.24.0
In Bioconductor since BioC 3.5 (R-3.4) (6 years)
License Artistic-2.0
Depends Biostrings, GenomicRanges, IRanges, Gviz, S4Vectors, ensembldb, AnnotationFilter, data.table
Imports methods, grid, Rsamtools, GenomeInfoDb, GenomicAlignments, RColorBrewer, graphics, AnnotationDbi, RCircos,,, rmarkdown, graph, Rgraphviz, DT, plyr, dplyr, BiocStyle, checkmate, gtools, magick
Suggests testthat, roxygen2, devtools, knitr, lintr
SystemRequirements bowtie, samtools, and egrep are required for some functionalities
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